rs52364077 SNP Detail

Summary

• ID
  rs52364077
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104433869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTGGGCAAG GTTAAATTAC AAATGAAATC
  ACTTATAATC ATGGTTCTGG AAAGATGTTT AACAGGAGTT ACAGTCAGGA AACTTTAGAG
  TGAAATACAT GTAGATTCAG tctctctctc tctctctctc tctctctctc tctctctctc
  Y
  ccctctctct ctctctctcA TATAACTAAG CATTTGACTA AAGACTCTAC CAGTGTGCTT
  CCCACGTGAT GAGACCTGCA GAGTAGGGCC TCACTTTTCA TTCTAGAACA CTGGAGATTG
  CTTCATAATA GCTAAAGTAA ACTGCTCCAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135569228	ENSMUSSNP3715309	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320861086	CHEV_3_104330476	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52364077					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104433869 () rs orientation: forward

Symbol	Name	Function Class
A530041M06Rik	RIKEN cDNA A530041M06 gene	within coordinates
Rr582533	regulatory region 582533	754 bp distal
Rr582534	regulatory region 582534	74 bp proximal
Rr582535	regulatory region 582535	1344 bp proximal