rs52364143 SNP Detail

Summary

• ID
  rs52364143
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37692452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGCACAA GGTCTGTTTT
  AAACTAAAAA TTTATAGTTT GTCTCAAGTC TCATGACTGC AGGCAATTAA AAAGGTGAAG
  CTGACTTCAT TAAATGTCTT CCAGATTCAA GGTTACTAAA TCCTAACCTA GGAACGTGTG
  ATCTCAAGAA ACACACAATG GAGGCATTTA AGCAGAATCA ATTTTGTGCA ATATATTTGA
  C
  TTTGAAATAG ACCATGACCT TTGAAGGTAA TATTTTTAAC ATTTTATGGA TTATTATTAC
  TATTATTATT ATTAAAAATT TTTAAACTTA AGAGATTTGT TTTAGCACAT CTCTGGTCCA
  AATATTCTGA AATGTAAATA GGAATCTTTG AAATTATGTT TTTATAAGTG TTATGTGGTT
  CAAACTCTCC ATTGTTGCCT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss134809903	ENSMUSSNP6259941	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss320711427	CHEV_3_37537225	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52364143					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37692452 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	1378 bp proximal
Gm42922	predicted gene 42922	1802 bp downstream
Rr575523	regulatory region 575523	1154 bp proximal
Rr575524	regulatory region 575524	1788 bp proximal
Spry1	sprouty RTK signaling antagonist 1	1644 bp upstream
Tssr28908	transcription start site region 28908	1361 bp upstream
Tssr28909	transcription start site region 28909	1602 bp upstream
Tssr28910	transcription start site region 28910	1625 bp upstream
Tssr28911	transcription start site region 28911	1642 bp upstream
Tssr28912	transcription start site region 28912	1682 bp upstream