rs52364346 SNP Detail

Summary

• ID
  rs52364346
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:94073017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTATGCA TGCATGTATT
  ATATGTATGC ATGTATGTAT GATACATATA TATCTATGAT ATATATGTGT ATATATATGT
  ATATATGTAT GGTATGATAT GGTGGTAGGT ATGATCTGTA TGTATATGTA TGCATGTATG
  ATATGCATGT ATGATCTGTA TGTATGTACT ATATGTATGT ATGATATGTA TGTATATGTA
  Y
  GCAGCATATC TAAAGTAGAT AGATCCACAA GCAGAACATA GACTAGTGAT GGGAACAATT
  GTGACAGCTG AAGGGAAGAC AGTTTCTGAG GGGAGGATTG ATAACTGTAA AATGCTGGGC
  ATGCACCAGA AACTGTTTAA CTGGCTTGTA CACAGTAGAA GGATGAGTCT TACAACATGT
  AAATTGCCTA GCAACTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60515982	NES16526652	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52364346					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60515982	NES16526652	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94073017 () rs orientation: forward

Symbol	Name	Function Class
D16Jhu35	DNA segment, Chr 16, Johns Hopkins University 35	1376 bp distal
Hlcs	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	within coordinates