rs52364883 SNP Detail

Summary

• ID
  rs52364883
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41493437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GAGAGAGAGA GAGAGAGAGA
  S
  AGAGAGAGAA AAGTTTGTCA GAAGT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322927326	CHEV_9_41390224	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52364883					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41493437 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	within coordinates
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	139 bp downstream
Rr677062	regulatory region 677062	790 bp distal
Rr677063	regulatory region 677063	676 bp distal
Rr677064	regulatory region 677064	528 bp distal
Rr677065	regulatory region 677065	129 bp distal
Rr677066	regulatory region 677066	2 bp distal
Rr677067	regulatory region 677067	within coordinates
Rr677068	regulatory region 677068	726 bp proximal
Tssr84518	transcription start site region 84518	1424 bp downstream
Tssr84519	transcription start site region 84519	1389 bp downstream
Tssr84520	transcription start site region 84520	1219 bp downstream
Tssr84521	transcription start site region 84521	1174 bp downstream
Tssr84522	transcription start site region 84522	1137 bp downstream
Tssr84523	transcription start site region 84523	1041 bp downstream
Tssr84524	transcription start site region 84524	881 bp downstream
Tssr84525	transcription start site region 84525	825 bp downstream
Tssr84526	transcription start site region 84526	790 bp downstream
Tssr84527	transcription start site region 84527	137 bp downstream
Tssr84528	transcription start site region 84528	883 bp upstream
Tssr88997	transcription start site region 88997	1333 bp upstream