rs52365381 SNP Detail

Summary

• ID
  rs52365381
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:166081188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATAG GTGTAGTCTC CCTCTCCCTC
  Y
  CCCTCCCCCT CCCCCTCCCC CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146015794	ENSMUSSNP975659	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320087512	CHEV_1_168183750	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52365381					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:166081188 () rs orientation: forward

Symbol	Name	Function Class
Cpgi965	CpG island 965	179 bp proximal
Gm70596	predicted gene, 70596	1912 bp downstream
Ildr2	immunoglobulin-like domain containing receptor 2	520 bp upstream
Rr422555	regulatory region 422555	84 bp proximal
Rr422556	regulatory region 422556	493 bp proximal
Rr422557	regulatory region 422557	585 bp proximal
Rr422558	regulatory region 422558	1975 bp proximal
Tssr9868	transcription start site region 9868	431 bp upstream
Tssr9869	transcription start site region 9869	476 bp upstream
Tssr9870	transcription start site region 9870	540 bp upstream
Tssr9871	transcription start site region 9871	567 bp upstream