rs52365888 SNP Detail

Summary

• ID
  rs52365888
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:180595014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTG GTTTGGTTTG GTTTGGTTTG
  C
  TTTGCTTTGG TTTGGAGACA GAGTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146385893	ENSMUSSNP436144	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs52365888					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:180595014 () rs orientation: forward

Symbol	Name	Function Class
5830405M20Rik	RIKEN cDNA 5830405M20 gene	within coordinates
Cpgi1118	CpG island 1118	778 bp proximal
Gm38293	predicted gene, 38293	within coordinates
Rr424562	regulatory region 424562	1659 bp distal
Rr424563	regulatory region 424563	532 bp distal
Rr424564	regulatory region 424564	15 bp proximal
Rr424565	regulatory region 424565	316 bp proximal
Rr424566	regulatory region 424566	630 bp proximal
Rr424567	regulatory region 424567	1187 bp proximal
Rr424568	regulatory region 424568	1989 bp proximal