rs52367348 SNP Detail

Summary

• ID
  rs52367348
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:71734969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CCTGTTACTC CAATTCTAGG GCATCTGATG CCCTTTTCTG
  CTCTCTGAAA GCACCTAAAC ACACATTACT ACACACTCAC GCACACACAC ACACACACAC
  W
  CACACTCACA CGCAGAGAGA GAGAGCAAGG CACAGAGACA CAGACAGACA GACAGGAATT
  AAAAAAATAA AAAGAAATCT TAAAACTTTA AATAAGGAAA C                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133277120	ENSMUSSNP6787922	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52367348					SNP	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:71734969 () rs orientation: forward

Symbol	Name	Function Class
Reep1	receptor accessory protein 1	within coordinates
Rr368098	regulatory region 368098	502 bp downstream
Rr368099	regulatory region 368099	140 bp downstream
Rr631995	regulatory region 631995	35 bp distal
Rr631996	regulatory region 631996	849 bp distal
Rr631997	regulatory region 631997	847 bp proximal