rs52368151 SNP Detail

Summary

• ID
  rs52368151
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24338827 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACTTGCCT TGTCCTACAG
  CATCACGGGA AATGTATGCT ATAGACTGTA GTCTACTTAT AGACTTTCGT GGGGGGGGGA
  GAGAGAGAGA GAGAAAGAGA GAGAGAGAGG GAGAGAGGGA GAGAGGGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAAC GAGAACATAC CTATAGAAGA
  M
  TACTGCAGGA TACAGAATGG AAGTCCATGA ACTAAGACTT GGGTTTCAAC TTATAAGCTT
  TTTGCCTGTA TGTCTTGGGA AATCCAGTTT GAGTCCTGAA AACTTAGGTG CCCCACTTGT
  TCCACAATAT TACGGAATGT AGTTCAGAGC TGGAGACATA CCTTCAGTGG TAGAGCCTCT
  GCTTAGAATC CCCCAGTGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60982641	NES16150972	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52368151					SNP	C	C	C	C	C	C	C	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60982641	NES16150972	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24338827 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18555	CpG island 18555	260 bp distal
Cpgi18556	CpG island 18556	627 bp proximal
Gm26550	predicted gene, 26550	1486 bp upstream
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr167239	regulatory region 167239	426 bp distal
Rr172826	regulatory region 172826	1049 bp proximal
Tssr65020	transcription start site region 65020	619 bp downstream
Tssr65021	transcription start site region 65021	605 bp downstream
Tssr65022	transcription start site region 65022	797 bp upstream