rs52368888 SNP Detail

Summary

• ID
  rs52368888
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27775869 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTCAGA TGTTGGAGTC
  AAGGGTATGT AATCCAGACA ATGGCCACTA GGATGCCAAC CCCTGCACAG ATTCTAAACA
  CTGTAATTAA CTCTTCCTTT ACCAGAGATA CCCATCTGTA CATTCCTGTC AGACTAGCAG
  TTTCTCTTTT TTTTAATGTA CTTGAAAGTC GATTCCAGTC ACCAGAACAT GTCACCAAAA
  W
  GACTTCAACA TATATATATA TATATATATA TATATATATA TATATATATA TATATATATT
  GTTAACTAGA GTGCAATGTT TAAGTAATTT TATTTGCTTA ATTTCTGGAT AAATTTATAT
  GTATTAAAAC TTGGAGCTGG GCCATATGGG ATAGGCCTAA ATCCAAGCTA CAGGGGAGGC
  TGTGTGGTGA GCACAGCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148630981	ENSMUSSNP1651203	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
ss322125244	CHEV_7_28861463	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52368888					SNP	T	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27775869 () rs orientation: forward

Symbol	Name	Function Class
Fcgbp	Fc fragment of IgG binding protein	within coordinates
Tssr65346	transcription start site region 65346	1256 bp downstream
Tssr65347	transcription start site region 65347	1229 bp downstream
Tssr65348	transcription start site region 65348	1202 bp downstream
Tssr65349	transcription start site region 65349	1142 bp downstream
Tssr65350	transcription start site region 65350	1116 bp downstream
Tssr65351	transcription start site region 65351	1094 bp downstream