rs52369445 SNP Detail

Summary

• ID
  rs52369445
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:107361505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAG ACCAGGCTGG CCTTGACTCG
  A
  AGAGATCCAC CTGTCTTTGC CTCCA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss145732432	ENSMUSSNP5167403	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322825748	CHEV_8_109158773	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52369445					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:107361505 () rs orientation: forward

Symbol	Name	Function Class
Cdh1	cadherin 1	within coordinates
Rr669236	regulatory region 669236	947 bp distal
Tssr79254	transcription start site region 79254	1416 bp upstream