rs52370682 SNP Detail

Summary

• ID
  rs52370682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:117257443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAAAATGTGT ATTTCTTTTT TCACTTTTCT TTCTTTCTTT
  CCTCTCTTTT CTTTTCGTCC TTCCTTTCTT TCTTTCTTTC TTTCTTTCCT CTTTTTCCTT
  Y
  CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTCTTTCTT CCTTTCTTTC
  TTTCTTAGCT TCTGAGAAAA GATCTAGCTA GATACCCCAG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149148349	ENSMUSSNP3937857	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52370682					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117257443 () rs orientation: forward

Symbol	Name	Function Class
9530046B11Rik	RIKEN cDNA 9530046B11 gene	655 bp downstream
Cpgi16405	CpG island 16405	345 bp proximal
Gm57263	predicted gene, 57263	within coordinates
Rr378521	regulatory region 378521	1601 bp upstream
Rr399292	regulatory region 399292	463 bp upstream
Rr618570	regulatory region 618570	1322 bp distal
Rr618571	regulatory region 618571	86 bp distal
Rr618572	regulatory region 618572	50 bp proximal
Rr618573	regulatory region 618573	655 bp proximal
Rr618574	regulatory region 618574	762 bp proximal
Taok3	TAO kinase 3	751 bp upstream
Tssr48350	transcription start site region 48350	742 bp upstream
Tssr48351	transcription start site region 48351	807 bp upstream
Tssr52880	transcription start site region 52880	498 bp downstream