rs52371118 SNP Detail

Summary

• ID
  rs52371118
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:25352445 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G AGCCAGAGCC AGAGCCAGAG CCAGAGCCAG AGCCAGAGCC
  AGAGCCAGAG CCAGAGTCAG AGCCAGAGCC CCAGAGCCAG AGCCAGAGGC AGAGGCAGAG
  C
  CAGAGGCAGA GCCAGAGGCA GAGCCAGAGC CAGAGCCAGA GCCAGAGCCA GAGCCAGAGC
  CAGAGCCAGG AAGCAGAGTC CTGTCCAGGC CTCAGGTCTG G                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146378520	ENSMUSSNP1192453	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52371118					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25352445 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11321	CpG island 11321	1129 bp distal
Gm74786	predicted gene, 74786	within coordinates
Paxx	non-homologous end joining factor	1339 bp upstream
Rr56431	regulatory region 56431	644 bp distal
Rr396822	regulatory region 396822	1239 bp downstream
Tssr16724	transcription start site region 16724	1212 bp downstream
Tssr22977	transcription start site region 22977	1502 bp upstream
Tssr22978	transcription start site region 22978	1474 bp upstream
Tssr22979	transcription start site region 22979	1450 bp upstream
Tssr22980	transcription start site region 22980	1429 bp upstream
Tssr22981	transcription start site region 22981	1393 bp upstream
Tssr22982	transcription start site region 22982	1353 bp upstream
Tssr22983	transcription start site region 22983	1321 bp upstream
Tssr22984	transcription start site region 22984	1304 bp upstream