rs52371427 SNP Detail

Summary

• ID
  rs52371427
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:117302454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATATATAT ACTCCTTCCC AGCACAGGTT CTCATATATA
  CATATATACA CATACATACA TACACACACA CACACACACA CACACACACA CACACACACA
  Y
  ATTATACATG TAGTTTCTGG AATATCAATC GCAGGTCTCC ATGCTTACAC AACAAGCACT
  TTGCCCATGG GGCTGAGTCC ACACAGCCTC TTGGTGCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145799709	ENSMUSSNP2338710	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52371427					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:117302454 () rs orientation: forward

Symbol	Name	Function Class
Cdyl2	chromodomain protein, Y chromosome-like 2	within coordinates
Tssr83068	transcription start site region 83068	1750 bp upstream