rs52372742 SNP Detail

Summary

• ID
  rs52372742
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:26757829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA TCCCACTCCT TCCCCCACTT
  Y
  CCACAGGCAC CTCCTTCCTC TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145405456	ENSMUSSNP6425688	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss325342288	CHEV_17_26675800	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52372742					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:26757829 () rs orientation: forward

Symbol	Name	Function Class
Gm50275	predicted gene, 50275	615 bp upstream
Rr405114	regulatory region 405114	505 bp downstream
Tssr143246	transcription start site region 143246	503 bp downstream