rs52374456 SNP Detail

Summary

• ID
  rs52374456
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:165435015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATTACACAGT GCCCAGCTAT TTACATGGAC ACTGAGGATC
  CAAAGTCGGG CCCTAATGCT GGCACCATAG CACTTCACCA GCTGAGCGCT CGTCCCAGCC
  C
  TTCAGTCTGG GATTTTAAAA CAAAAACCTT TAAAACAAAA CATTTTTGTT TGTTTGTTTG
  TTTATAAGAA AAAAGTGAGG TTCAGGGGCC AGGTCAAAGC C                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148241300	ENSMUSSNP5490480	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52374456					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165435015 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12713	CpG island 12713	1509 bp proximal
Eya2	EYA transcriptional coactivator and phosphatase 2	1937 bp upstream
Rr569954	regulatory region 569954	838 bp proximal
Rr569955	regulatory region 569955	1447 bp proximal
Rr569956	regulatory region 569956	1948 bp proximal
Tssr21727	transcription start site region 21727	1914 bp upstream