rs52375472 SNP Detail

Summary

• ID
  rs52375472
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130536858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGTG AGATCCTGCC CAAATTATTT
  T
  TTTGTTTGTT TGTTTGTTTG TTTGT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147597285	ENSMUSSNP6732254	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52375472					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130536858 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12275	CpG island 12275	1576 bp proximal
Rr373865	regulatory region 373865	within coordinates
Rr565122	regulatory region 565122	1570 bp proximal
Slc4a11	solute carrier family 4, sodium bicarbonate transporter-like, member 11	within coordinates