rs52375772 SNP Detail

Summary

• ID
  rs52375772
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128518268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTATGAGGA TTAGCCAAAG GAGGAAGGAA AGAAAGAAAG
  AAAGAAAGAA AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAAAGAAAG
  R
  AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA AAGAAAGAAA GAAAGAAAGA
  AAGAAAGAAA GAAAGACGGA GCTTGACGGT GGGGGTCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145462285	ENSMUSSNP1196721	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52375772					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128518268 () rs orientation: forward

Symbol	Name	Function Class
Cpgi697	CpG island 697	253 bp proximal
Cxcr4	C-X-C motif chemokine receptor 4	within coordinates
Gm57160	predicted gene, 57160	1844 bp upstream
Rr28453	regulatory region 28453	within coordinates
Rr366855	regulatory region 366855	552 bp upstream
Rr396264	regulatory region 396264	1621 bp upstream
Tssr196	transcription start site region 196	1705 bp downstream
Tssr8536	transcription start site region 8536	423 bp upstream
Tssr8537	transcription start site region 8537	746 bp upstream
Tssr8538	transcription start site region 8538	774 bp upstream
Tssr8539	transcription start site region 8539	788 bp upstream
Tssr8540	transcription start site region 8540	1914 bp upstream
Tssr13462	transcription start site region 13462	1899 bp upstream
Tssr13463	transcription start site region 13463	1799 bp upstream
Tssr13464	transcription start site region 13464	1757 bp upstream
Tssr13465	transcription start site region 13465	1744 bp upstream
Tssr13466	transcription start site region 13466	1673 bp upstream
Tssr13467	transcription start site region 13467	1631 bp upstream
Tssr13468	transcription start site region 13468	1545 bp upstream
Tssr13469	transcription start site region 13469	1491 bp upstream
Tssr13470	transcription start site region 13470	1401 bp upstream
Tssr13471	transcription start site region 13471	1329 bp upstream
Tssr13472	transcription start site region 13472	1261 bp upstream
Tssr13473	transcription start site region 13473	1246 bp upstream
Tssr13474	transcription start site region 13474	1185 bp upstream
Tssr13475	transcription start site region 13475	1164 bp upstream
Tssr13476	transcription start site region 13476	1152 bp upstream
Tssr13477	transcription start site region 13477	1086 bp upstream
Tssr13478	transcription start site region 13478	285 bp downstream
Tssr13479	transcription start site region 13479	314 bp downstream
Tssr13480	transcription start site region 13480	636 bp downstream
Tssr13481	transcription start site region 13481	1753 bp downstream