rs52375942 SNP Detail

Summary

• ID
  rs52375942
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36054961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTACCGATTG GCTGATTGGA CCATGTGCCT GGGGGGTGGG
  GAGTGAACTG TGAGGGGCTG GGCTCCATCT GGAGGGGCGG GGCCAGGTTT TTTTTTTTTT
  T
  TTTTTTTTTT TTTTTAGCAC AGAGCATGAG AGGAAAATGC ACAGCCCCTC AAACCACCAC
  TCAAGCAAAA TGCAAGCTTT CTCACTAAAC ATCAGGAAA                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss134776686	ENSMUSSNP5157248	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs52375942					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36054961 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13078	CpG island 13078	53 bp distal
Mccc1	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)	134 bp upstream
Mccc1os	methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), opposite strand	within coordinates
Rr397641	regulatory region 397641	within coordinates
Rr575296	regulatory region 575296	889 bp distal
Rr575297	regulatory region 575297	367 bp distal
Rr575298	regulatory region 575298	within coordinates
Rr575299	regulatory region 575299	21 bp distal
Tssr28858	transcription start site region 28858	372 bp downstream
Tssr33012	transcription start site region 33012	204 bp upstream
Tssr33013	transcription start site region 33013	165 bp upstream
Tssr33014	transcription start site region 33014	152 bp upstream
Tssr33015	transcription start site region 33015	130 bp upstream