rs52376168 SNP Detail

Summary

• ID
  rs52376168
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133089728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTGTCCCAAG GGACTAAGGC AGAAGTGATG ATCGAGCAGG
  ACACCTAAGT TCTTCTTTGG CCTCTGCATG GGATTACTGT GCCCCGCCCC CCCCTCTCTT
  W
  CACACACACA CACACACACA CACACACACA CACACACACG GGGTGGAGGT GGGGGTGGGG
  GGCAACTGTC TTCTGGGGAG GCCAGCTTGA TGGAGGCCGC T                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145490330	ENSMUSSNP413592	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52376168					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133089728 () rs orientation: forward

Symbol	Name	Function Class
Cpgi742	CpG island 742	1664 bp proximal
Rr19297	regulatory region 19297	528 bp distal
Rr28535	regulatory region 28535	1272 bp proximal
Tssr211	transcription start site region 211	1944 bp upstream
Tssr8784	transcription start site region 8784	1861 bp upstream
Tssr8785	transcription start site region 8785	1984 bp upstream