rs52376561 SNP Detail

Summary

• ID
  rs52376561
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:32245332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC CACACATAAG AGGAAGAAAA
  K
  ATATAGGTGG AAGGGGAGGG GAAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323630339	CHEV_11_32195332	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs52376561					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:32245332 () rs orientation: forward

Symbol	Name	Function Class
Gm73808	predicted gene, 73808	within coordinates
Gm74521	predicted gene, 74521	1156 bp downstream
Hba-a2	hemoglobin alpha, adult chain 2	1157 bp upstream
Rr444566	regulatory region 444566	1961 bp distal
Rr444567	regulatory region 444567	1506 bp distal
Rr444568	regulatory region 444568	1205 bp distal
Rr444569	regulatory region 444569	667 bp proximal
Rr444570	regulatory region 444570	1964 bp proximal
Tssr100842	transcription start site region 100842	1159 bp upstream
Tssr100843	transcription start site region 100843	1795 bp upstream