rs52376688 SNP Detail

Summary

• ID
  rs52376688
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:57719806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACACTGAT TTGAGGTAGA
  AAGAGGGTGG GGGTAGGGAG ATGTATACCT GAGAGCAACA GGCATGATAG GTAGTTTAAA
  TACGTTACAA ATTCAGCAAC GAATGGGAAC GCTTTTATTT AGAAGGAAAA GGAAAGAAAT
  GAAGGAGAAG GAAGGAAGAG AAAGAGGAGG TAAGAGGACG GAAGAGGGGA AAGGAGGAGG
  M
  GAGGGGAGGG AAGGGAAGGG AAAGGAAGGG AAAGATTTCC CTTGGAAAGC AGAGGTGCTG
  CGCAAGGGAG CAACGCCTTC CCTCTAGGTA GGAAGTGTAG CGACAAGAAG GAAAACCATC
  GCTGCTCAGG AGAGGTCAAC CCAGGCAGCG TCAGTCTTCC TGGTTAGAAA CTACCAATTA
  CTCTTATTGC ATTTTAACTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss132181244	ENSMUSSNP6941295	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323685754	CHEV_11_57642482	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52376688					SNP	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:57719806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2910	CpG island 2910	620 bp distal
Cpgi2911	CpG island 2911	93 bp proximal
Hand1	heart and neural crest derivatives expressed 1	within coordinates
Rr447811	regulatory region 447811	1223 bp distal
Rr447812	regulatory region 447812	463 bp distal
Rr447813	regulatory region 447813	within coordinates
Rr447814	regulatory region 447814	505 bp proximal
Tssr3506	transcription start site region 3506	290 bp downstream
Tssr108123	transcription start site region 108123	17 bp upstream
Tssr108124	transcription start site region 108124	37 bp downstream
Tssr108125	transcription start site region 108125	69 bp downstream
Tssr108126	transcription start site region 108126	255 bp downstream
Tssr108127	transcription start site region 108127	328 bp downstream
Tssr108128	transcription start site region 108128	335 bp downstream
Tssr108129	transcription start site region 108129	466 bp downstream