rs52376689 SNP Detail

Summary

• ID
  rs52376689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:28020607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctgcatgca tatgatgcac agacatacat
  gcacacaaac attatatatg agacaaTCAC AACCATAGAA CCACATACCC TCTACTGGCC
  TCCACAGCCC TGGCACTGTG TGCACACATC AACAAGGaca cacgcacatg tacatacata
  Y
  acacacacac acacacacac acacacacac acggaccata aagatggctt agcaagtgcc
  agcatctgtt ccaaccacgg cggcctgagt acaaggtggg agaggagagg caggctgtcc
  tctgactcca cataacagcc ttgatacacg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145419503	ENSMUSSNP6741545	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss325349713	CHEV_17_27938578	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52376689					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28020607 () rs orientation: forward

Symbol	Name	Function Class
Ilrun	inflammation and lipid regulator with UBA-like and NBR1-like domains	within coordinates
Rr330150	regulatory region 330150	within coordinates
Rr392473	regulatory region 392473	408 bp downstream