rs52376716 SNP Detail

Summary

• ID
  rs52376716
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:62021372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCAATTT AAGAAAGGGT
  TTATTTTTGG TCCATGTTTT GACCTCACAA TCCTCCTGCC TCCACCCCCT GAGTGCTGGA
  TTACAGGCAT GGATCAGCCC CCATGCTCAG CAAATTACTA TTTACTTGTG CTGTGCATAT
  TTCAAAAGGA AGTTTCTTCA ACAGTTTTTT TTTTTTTAAA TTTTCACAGG AAACCAGGGT
  Y
  CCTAAACACA TTTTTCTTTT TAAGATTTAT TTATTTTATG TATATGTGTA CTCTGTAGCT
  GTCTTCAGAC ACACCAGAAC AGGGTGGGTG TCCATTACAG ATGGTTGTGA GCCACCATGT
  GGTTGCTGGG AATTGAACTC AGGACCTCGG AAAGAGCAGT CAGTGCTCTT AACCGCTGAG
  CCATCTCTCC AGCCCCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss61279725	NES16893298	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T		T	T		C
ss323330852	CHEV_10_61648341	CHEVERUD	SCREENING_POP	f	SNP								C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs52376716					SNP	T	T	T	T	C	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61279725	NES16893298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:62021372 () rs orientation: forward

Symbol	Name	Function Class
Rr215628	regulatory region 215628	1772 bp distal
Rr215629	regulatory region 215629	1029 bp proximal
Rr228219	regulatory region 228219	1718 bp distal
Rr228220	regulatory region 228220	751 bp proximal
Tspan15	tetraspanin 15	within coordinates
Tssr97791	transcription start site region 97791	1893 bp downstream