rs52378306 SNP Detail

Summary

• ID
  rs52378306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:76127864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGCCATGT AAAGCTGGAG TATATGATTA GAAGGTGTGA
  GGGCCTGATT CAAGCAGCAA GAAAAAATAA GGGGGAAAAA AAATGAAAGA AACAAAAAAA
  R
  GGGGGGGGGA TTGGAGCTGG TTCAGTGGTT AGAGCACTTG CTGTTCTAGA AAACCCAAAT
  TCAATTCCTA GCACTCACAA CCATCTGTTA ACTCCAGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss139752767	ENSMUSSNP842655	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324673377	CHEV_14_76290231	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52378306					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:76127864 () rs orientation: forward

Symbol	Name	Function Class
Gm52138	predicted gene, 52138	1892 bp upstream
Gm62917	predicted gene, 62917	within coordinates
Rr296309	regulatory region 296309	1652 bp proximal