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rs52378306 SNP Detail
Summary
  • ID
    rs52378306
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr14:76127864 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          AAAGCCATGT AAAGCTGGAG TATATGATTA GAAGGTGTGA
    GGGCCTGATT CAAGCAGCAA GAAAAAATAA GGGGGAAAAA AAATGAAAGA AACAAAAAAA
    R
    GGGGGGGGGA TTGGAGCTGG TTCAGTGGTT AGAGCACTTG CTGTTCTAGA AAACCCAAAT
    TCAATTCCTA GCACTCACAA CCATCTGTTA ACTCCAGTT                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
LG/J
SM/J
ss139752767 ENSMUSSNP842655 ENSEMBL ENSEMBL_Sanger f SNP A A
ss324673377 CHEV_14_76290231 CHEVERUD SCREENING_POP f SNP G A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
LG/J
SM/J
rs52378306 SNP A A G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:76127864 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm52138 predicted gene, 52138 1892 bp upstream
Gm62917 predicted gene, 62917 within coordinates
Rr296309 regulatory region 296309 1652 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory