rs52378889 SNP Detail

Summary

• ID
  rs52378889
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147824485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAC AATGGTAAAA TCAACCACAC
  R
  ATTTGGCACC AGCACTCTCG GGCAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147908128	ENSMUSSNP4718373	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320554380	CHEV_2_147808301	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs52378889					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147824485 () rs orientation: forward

Symbol	Name	Function Class
9030622O22Rik	RIKEN cDNA 9030622O22 gene	within coordinates
Rr374033	regulatory region 374033	1411 bp upstream
Rr566832	regulatory region 566832	1614 bp distal
Rr566833	regulatory region 566833	1984 bp proximal