rs52379782 SNP Detail

Summary

• ID
  rs52379782
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113366806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTCAGAG CACAGGGAAA
  GGCAGTACAA GCAGGTGGGC GATTTCTGGC ATGACCAACA GCTAGGCCCA CACCCACCTG
  AAGACTCCAG TCACCTCCTC CTCCATCCTC ACACTCCCTG CTTAGTAGGT CTATAGGCTC
  CCCAGATATC TTTTCCTTTT TCTTTCTTTC TTTCTTTCTT TCTTTTTTTT TTTTTTTTTT
  W
  AAACAAGCAT TAGCTGGCTG TCCCCAGGCA GGACCCTGGG GAAAATTACT ATATTTTACC
  TAGGGTCTCC TCCAGAGCCC TAAGTCTGCT TGGTGCCTGA TGGGGAAGAG CAGATCACTG
  GAGAACTTGG CGGAAGAACT GGGCTTCCAG CTGCTGCCTT CCTGGTTCCC CCAGAGAGTT
  GCGAGAGGAA ATGGTTGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145682786	ENSMUSSNP2377156	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52379782					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113366806 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	546 bp distal
Rr653859	regulatory region 653859	1385 bp distal
Rr653860	regulatory region 653860	120 bp proximal
Rr653861	regulatory region 653861	1083 bp proximal
Rr653862	regulatory region 653862	1706 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	within coordinates
Tssr68625	transcription start site region 68625	1774 bp downstream
Tssr68626	transcription start site region 68626	1722 bp downstream
Tssr68627	transcription start site region 68627	1658 bp downstream
Tssr68628	transcription start site region 68628	1530 bp downstream
Tssr68629	transcription start site region 68629	1506 bp downstream
Tssr68630	transcription start site region 68630	1471 bp downstream
Tssr68631	transcription start site region 68631	1370 bp downstream
Tssr68632	transcription start site region 68632	1314 bp downstream