rs52379934 SNP Detail

Summary

• ID
  rs52379934
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45111677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C TTAGGGCCAG CAAGATAGCT CATGCACAAA AGGACACACA
  CGCGCGCGCG CGTGCGCGCA AATGTAAAAA GTATCCCACT CAACCCACGA TCCCAAAATG
  R
  GAAAACAAAA CAAAATGAAA ACAAAACAAA ACAAAACAAA ATAAAAAACC AAAAACCCGT
  GATTAACATC TGGAAGTGGT AGCCCATAGC AGTAATCTCA G                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149135541	ENSMUSSNP3525701	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52379934					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45111677 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	Intron
Gm10252	predicted gene 10252	1953 bp downstream
Gm73429	predicted gene, 73429	790 bp upstream
Gm73431	predicted gene, 73431	603 bp downstream
Rr380754	regulatory region 380754	821 bp downstream
Rr646450	regulatory region 646450	1879 bp distal
Rr646452	regulatory region 646452	1234 bp distal
Rr646453	regulatory region 646453	801 bp distal
Rr646454	regulatory region 646454	304 bp distal
Rr646455	regulatory region 646455	786 bp proximal
Tssr66542	transcription start site region 66542	1153 bp downstream
Tssr72399	transcription start site region 72399	1307 bp upstream
Tssr72400	transcription start site region 72400	1276 bp upstream