rs52380992 SNP Detail

Summary

• ID
  rs52380992
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148373635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGG CAGTTTGGGA GTTCTCTGAA
  Y
  CCCTCTCACT TTGGGGTTCT ACAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148000273	ENSMUSSNP6910053	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss321418882	CHEV_4_147663287	CHEVERUD	SCREENING_POP	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs52380992					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148373635 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	396 bp distal
Disp3	dispatched RND transporter family member 3	1213 bp upstream
Gm68159	predicted gene, 68159	254 bp downstream
Rr604639	regulatory region 604639	1224 bp distal
Rr604640	regulatory region 604640	901 bp distal
Rr604641	regulatory region 604641	1003 bp distal
Rr604642	regulatory region 604642	344 bp distal
Rr604643	regulatory region 604643	860 bp distal
Rr604644	regulatory region 604644	725 bp distal
Rr604645	regulatory region 604645	580 bp distal
Rr604646	regulatory region 604646	1940 bp proximal
Tssr44603	transcription start site region 44603	1224 bp upstream