rs52381054 SNP Detail

Summary

• ID
  rs52381054
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136348115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGCACACA TAATTAAAAT ACAATATTTT AAAGGGAAAT
  ATGAGATATC TTGTATAAAA AAGAAGATGG CCAATTCCTT CCTCTCTGAC GTGTGTGTGT
  G
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGAGAGAGAG AGAGAGAGAG AGAGAGCACG
  CATGTGTGCA CACAGGTGCT GGCACATTGT GTATGTGTA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147573128	ENSMUSSNP578976	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs52381054					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136348115 () rs orientation: forward

Symbol	Name	Function Class
Lactbl1	lactamase, beta-like 1	1817 bp upstream
Rr86434	regulatory region 86434	286 bp proximal
Rr103033	regulatory region 103033	716 bp distal
Rr106544	regulatory region 106544	642 bp proximal
Rr398615	regulatory region 398615	521 bp upstream
Tssr39716	transcription start site region 39716	1808 bp upstream
Tssr39717	transcription start site region 39717	1827 bp upstream