rs52381481 SNP Detail

Summary

• ID
  rs52381481
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14928518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TCTATGTAAG TCTCAGCTTA ACTCATTTCT GTTCCCAAGC
  CTACCTCTCA TATATGTCCA TATATATATA TATATATATA TATATATATA TATATATACA
  Y
  ACACACACAC ACACACACAC ACACATATAT ATACCATCAC TGCTGACTCA ATTCATCCTG
  GGTCACAAAC CCAAGACATC CTAGTATCAT ATTCTCCTTT C                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss146046313	ENSMUSSNP2208890	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52381481					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14928518 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	1319 bp proximal
Gm11837	predicted gene 11837	1390 bp upstream
Gm68732	predicted gene, 68732	1209 bp downstream
Rr589248	regulatory region 589248	843 bp proximal
Rr589249	regulatory region 589249	1344 bp proximal
Rr589250	regulatory region 589250	1932 bp proximal
Tssr36545	transcription start site region 36545	1342 bp upstream