rs52382059 SNP Detail

Summary

• ID
  rs52382059
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:15077383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AAGGAATTTC ATAAGCTCTA TATTTGTATT TAGGTTCCCT
  TTCTCTCTCT CTCTGTTTCT CTGTCTGTCT CTCTCTTTCT GTCTCTCTGT CTCTGTCTCT
  G
  TCTCTGTCTC TTTCTCTCTC TCTCTCTCTC TCTCGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTCTCC TGAGAGGCTC TGCCAGTGCA AATACAAATA C                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147915688	ENSMUSSNP6901804	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss147928881	ENSMUSSNP2000566	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss147937405	ENSMUSSNP458661	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs52382059					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:15077383 () rs orientation: forward

Symbol	Name	Function Class
D5Mit103b	DNA segment, Chr 5, Massachusetts Institute of Technology 103b	within coordinates
Gm17019	predicted gene 17019	1581 bp downstream
Gm71745	predicted gene, 71745	within coordinates
Rr111907	regulatory region 111907	1818 bp proximal
Rr121520	regulatory region 121520	1969 bp distal
Rr121523	regulatory region 121523	701 bp proximal
Rr121525	regulatory region 121525	1917 bp proximal
Rr128307	regulatory region 128307	within coordinates