rs52382961 SNP Detail

Summary

• ID
  rs52382961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50585534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGCACTGCTG TTGGAAAGGA CTTCTACAGA GAGCCAGCTG
  AAACAACCAG CCTAGTTGGG ACCACCTGGT TTGTGTGAGC AACGACTAGA TCCTGGGACT
  Y
  GCTGCGTTCC CCTGCTGCTG CTGCTGCTGC TGCTGCTGCT GCTGCTGCTG CTGCTGCTGC
  TGCTGCTGCT GCTGCTGCAG TCATGGCGTC ATCCACCGTG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133182626	ENSMUSSNP2248249	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs52382961					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50585534 () rs orientation: forward

Symbol	Name	Function Class
Gm4782	predicted gene 4782	83 bp upstream
Rr379340	regulatory region 379340	within coordinates
Tssr56424	transcription start site region 56424	126 bp downstream