rs52383191 SNP Detail

Summary

• ID
  rs52383191
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:79415803 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA GAAAAGAAAA GAAAAAAAGG
  A
  AAAAAAACCT TCATTCATTT TTTTC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss144776190	ENSMUSSNP544651	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss319807654	CHEV_1_79434661	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52383191					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:79415803 () rs orientation: forward

Symbol	Name	Function Class
Cpgi462	CpG island 462	1897 bp proximal
Rr17631	regulatory region 17631	1798 bp proximal
Rr29696	regulatory region 29696	597 bp proximal
Rr29697	regulatory region 29697	1397 bp proximal
Scg2	secretogranin II	within coordinates
Tssr12433	transcription start site region 12433	1821 bp upstream
Tssr12434	transcription start site region 12434	1738 bp upstream
Tssr12435	transcription start site region 12435	1917 bp downstream
Tssr12436	transcription start site region 12436	1929 bp downstream
Tssr12437	transcription start site region 12437	1953 bp downstream