rs52383996 SNP Detail

Summary

• ID
  rs52383996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85341159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ATATCTGCAT GTTCAACCTA CTGTAAATTA TATATATATA
  TATATATATA TATATATATA TATATATATA TATATACACA CACATACATA CACATACACA
  Y
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC ATATATATAT
  ACACTTGAAA AATATTTAGG AAGGGGCCGA AATAGCTAAA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146149154	ENSMUSSNP5000697	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52383996					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85341159 () rs orientation: forward

Symbol	Name	Function Class
Rr343448	regulatory region 343448	242 bp proximal
Slc3a1	solute carrier family 3, member 1	within coordinates
Tssr146077	transcription start site region 146077	96 bp downstream