rs52384826 SNP Detail

Summary

• ID
  rs52384826
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29151222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAGACGAGA GCTCCGCCTA CAGACGAGAG CTCCGCCTAC
  AGACGACTCT CCTGATTCTG AGGGCTCCAA AGCACCTCAC AGATGCTTGC TTGCTTGCTT
  G
  CTTTCTTTCT TTCTTTCTTT CTTTCTTTCT TTCTTTCTTT CTTTCTTTCC TTTTTTTGTT
  TTGAGGCTCT GTTTCAACCT GAGTGGCTCC CTCCACCCC                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145425715	ENSMUSSNP3483925	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52384826					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29151222 () rs orientation: forward

Symbol	Name	Function Class
Gm16191	predicted gene 16191	within coordinates
Pxt1	peroxisomal, testis specific 1	1738 bp downstream
Rr392487	regulatory region 392487	801 bp downstream
Rr524716	regulatory region 524716	1620 bp distal
Rr524717	regulatory region 524717	1695 bp distal
Rr524718	regulatory region 524718	743 bp distal
Rr524719	regulatory region 524719	976 bp distal
Rr524720	regulatory region 524720	within coordinates