rs52384996 SNP Detail

Summary

• ID
  rs52384996
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32877453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGTCCA TTTTTCACAG
  AAGAACAAGA AGGGCCCTGA CCTGTTCTGC CTGGATCCCA TCTGCTGCTA GCCCATCTTA
  GCCTTGCTCT CACATACCTT CCCTCCTCAC TCCATATCCT AGCCCAGCCC AGCCCAGCCC
  AGCCCAGCCC AGCCCAGCCC AGCCCAGCCC AGCCCAGCCC TAGCTGTGTT CTTCTAGCTG
  R
  GCTATTGATC CCTGGAATCT GACCTGGGAA ATCACTTGTT GAACAGCTTC TTAAAGAAAC
  ATGTCTACTA AGACCCGGTG TTGCATGGAG GTAGGGTTTG ACTGCTGCCT GACTGCAGCT
  AGACAGAAAT TCAAGAGTCT CCCAGTTCTG CACCAAGAAA TCCTACAGGC CTTCCACCCA
  TACAAACTTG CATAGAAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss62679617	NES17313147	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	A	G		G
ss325362709	CHEV_17_32795424	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs52384996					SNP	G	G	G	G	G	G	G	G	G	G	A	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62679617	NES17313147	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32877453 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f40	cytochrome P450, family 4, subfamily f, polypeptide 40	421 bp upstream
Gm65897	predicted gene, 65897	within coordinates
Tssr143725	transcription start site region 143725	399 bp upstream
Tssr143726	transcription start site region 143726	487 bp upstream
Tssr143727	transcription start site region 143727	510 bp upstream
Tssr143728	transcription start site region 143728	530 bp upstream
Tssr143729	transcription start site region 143729	542 bp upstream
Tssr143730	transcription start site region 143730	565 bp upstream
Tssr143731	transcription start site region 143731	587 bp upstream
Tssr143732	transcription start site region 143732	601 bp upstream