rs52386162 SNP Detail

Summary

• ID
  rs52386162
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:13250563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CTCTGCGGGA TCCATGCGGA GAAGGGCCAG GGACCGCGGG ACTCACAACC
  W
  CTGCAGCCCC GAGCGCTGGA CCCCGGTGCG CCGCTGGCCC CGGGGCGCGC           
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	MSM/Ms	SM/J
ss148683956	ENSMUSSNP6551314	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
ss322505054	CHEV_8_13200563	CHEVERUD	SCREENING_POP	f	SNP		T		A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	MSM/Ms	SM/J
rs52386162					SNP	T	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:13250563 () rs orientation: forward

Symbol	Name	Function Class
2810030D12Rik	RIKEN cDNA 2810030D12 gene	219 bp upstream
Cpgi20110	CpG island 20110	within coordinates
Gm56825	predicted gene, 56825	79 bp downstream
Grtp1	GH regulated TBC protein 1	within coordinates
Rr659872	regulatory region 659872	995 bp distal
Rr659873	regulatory region 659873	within coordinates
Rr659874	regulatory region 659874	402 bp proximal
Rr659875	regulatory region 659875	921 bp proximal
Rr659876	regulatory region 659876	1309 bp proximal
Rr659877	regulatory region 659877	1660 bp proximal
Tssr76386	transcription start site region 76386	213 bp upstream
Tssr76387	transcription start site region 76387	383 bp upstream
Tssr80428	transcription start site region 80428	13 bp downstream
Tssr80429	transcription start site region 80429	850 bp downstream