rs52386331 SNP Detail

Summary

• ID
  rs52386331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87754936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGGCGGCA GCGTGGCTCT
  CTCTGCGCTC GGCTGGAGGA CCTTCTTCCA CCCGTCCTGC CTGCCACAGA CACACGCACA
  CACTCACCTT CCCGCCCCGT ATGGAGGTGC TGCTGACAAA AACAACACGG GCCAAAACAA
  AAAATAAATA AAACTGAAGG ACACCCCCCC CCCCCAGTAA ACACCCACCC AGCGCGCCCA
  R
  CTTCTCAGCG TTGCTGCATA GGGAGGCCGG TCGTTTTTCA TTACACGGTG CCGAACCCAT
  GCAGCTCAGC TGACAAGCTA ATCAAAAAAG GGGCTTCCGT TTATGCCTAC CCTTCGCTTC
  TCTTTCCTAG CAGTAATTTA TCAGAAAGCT ACTCAAACCC ACTGTATCCG AGAGTGTGTG
  CTGTCGGTCT CCCCAAGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146179910	ENSMUSSNP5269321	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52386331					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87754936 () rs orientation: forward

Symbol	Name	Function Class
Calm2	calmodulin 2	573 bp upstream
Cpgi9626	CpG island 9626	within coordinates
Gm65472	predicted gene, 65472	within coordinates
Rr370330	regulatory region 370330	587 bp downstream
Rr370331	regulatory region 370331	267 bp downstream
Rr393074	regulatory region 393074	1038 bp downstream
Rr532694	regulatory region 532694	1461 bp distal
Rr532695	regulatory region 532695	895 bp distal
Rr532696	regulatory region 532696	663 bp distal
Rr532697	regulatory region 532697	83 bp distal
Tssr146185	transcription start site region 146185	1358 bp downstream
Tssr146186	transcription start site region 146186	828 bp downstream
Tssr146187	transcription start site region 146187	270 bp downstream
Tssr149773	transcription start site region 149773	639 bp upstream