rs52386594 SNP Detail

Summary

• ID
  rs52386594
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73933010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT GGTGGTTGTT GGTGGTGGTG
  S
  TGATGTGTCT ATGTGTTTCT ATGCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146558490	ENSMUSSNP6266481	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52386594					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73933010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14388	CpG island 14388	529 bp distal
Frmd3	FERM domain containing 3	within coordinates
Rr101135	regulatory region 101135	within coordinates
Rr105564	regulatory region 105564	1591 bp proximal
Tssr37633	transcription start site region 37633	1099 bp downstream