rs52386798 SNP Detail

Summary

• ID
  rs52386798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156075908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATC TCCACATTCA TAACCAGATG
  Y
  CCTTGGGTAG GCCTTACACC AGACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss148124173	ENSMUSSNP526461	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321444379	CHEV_4_155365560	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52386798					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156075908 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	within coordinates
Cpgi15496	CpG island 15496	25 bp proximal
Rr377473	regulatory region 377473	766 bp upstream
Rr606628	regulatory region 606628	922 bp distal
Rr606629	regulatory region 606629	89 bp distal
Rr606630	regulatory region 606630	1123 bp proximal
Rr606631	regulatory region 606631	1188 bp proximal
Rr606632	regulatory region 606632	1199 bp proximal
Rr606633	regulatory region 606633	1441 bp proximal
Rr606634	regulatory region 606634	1802 bp proximal
Rr606635	regulatory region 606635	1937 bp proximal
Sdf4	stromal cell derived factor 4	1421 bp upstream
Tssr1404	transcription start site region 1404	1488 bp upstream
Tssr40748	transcription start site region 40748	949 bp upstream
Tssr40749	transcription start site region 40749	1692 bp upstream
Tssr40750	transcription start site region 40750	1779 bp upstream
Tssr40751	transcription start site region 40751	1854 bp upstream
Tssr40752	transcription start site region 40752	1997 bp upstream
Tssr44987	transcription start site region 44987	880 bp downstream
Tssr44988	transcription start site region 44988	1153 bp downstream