rs52387698 SNP Detail

Summary

• ID
  rs52387698
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136806396 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAACT TGGTCTGTCT CGAAAAAAAA
  A
  CAAAAAGCAA AACAAAACAA CAAAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133848598	ENSMUSSNP3666017	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs52387698					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136806396 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	within coordinates
Cpgi18110	CpG island 18110	975 bp distal
Rr380176	regulatory region 380176	31 bp downstream
Rr640072	regulatory region 640072	1176 bp distal
Rr640073	regulatory region 640073	545 bp distal
Rr640074	regulatory region 640074	256 bp distal
Smco3	single-pass membrane protein with coiled-coil domains 3	533 bp downstream
Tssr2044	transcription start site region 2044	918 bp downstream
Tssr59337	transcription start site region 59337	1638 bp downstream
Tssr59338	transcription start site region 59338	1600 bp downstream
Tssr59339	transcription start site region 59339	1587 bp downstream
Tssr59340	transcription start site region 59340	1559 bp downstream
Tssr59341	transcription start site region 59341	942 bp downstream
Tssr59342	transcription start site region 59342	573 bp downstream
Tssr63836	transcription start site region 63836	1654 bp upstream
Tssr63837	transcription start site region 63837	1637 bp upstream
Tssr63838	transcription start site region 63838	1629 bp upstream
Tssr63839	transcription start site region 63839	1573 bp upstream
Tssr63840	transcription start site region 63840	1336 bp upstream
Tssr63841	transcription start site region 63841	1219 bp upstream
Tssr63842	transcription start site region 63842	1201 bp upstream
Wbp11	WW domain binding protein 11	1182 bp upstream