rs52387728 SNP Detail

Summary

• ID
  rs52387728
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88430912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTT CCTACTCATT AAACAGGAAG
  M
  AGCACACACA CACACACACA CACAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss132535228	ENSMUSSNP270226	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		A
ss323779781	CHEV_11_88353588	CHEVERUD	SCREENING_POP	f	SNP		C		C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs52387728					SNP	C	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88430912 () rs orientation: forward

Symbol	Name	Function Class
Msi2	musashi RNA-binding protein 2	within coordinates
Tssr110017	transcription start site region 110017	367 bp downstream
Tssr110018	transcription start site region 110018	1549 bp downstream