rs52387741 SNP Detail

Summary

• ID
  rs52387741
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172028427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGAAACT TAGAAAAGCT AGGAGCCGAG AGTGATAAGT
  CATAACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC
  M
  CCAATACACC ATCTTTTTCT TCTTTTTCCC TCCCTTAACG GTAACCCTGG CAACAGCTCC
  CCTGACTGAG GAGGCGGTTA CCATGGCAAC ATTCTCCAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120007298	PARCsnp_1.17727	PARC_SEQ	INBRED	f	SNP		C	A
ss120010195	PARCsnp_1.07365	PARC_SEQ	INBRED	f	SNP		C	A
ss146183733	ENSMUSSNP4603978	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss320123175	CHEV_1_174130991	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs52387741					SNP	A	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172028427 () rs orientation: forward

Symbol	Name	Function Class
Pea15a	proliferation and apoptosis adaptor protein 15A	within coordinates
Rr28998	regulatory region 28998	within coordinates
Tssr15158	transcription start site region 15158	1692 bp upstream
Tssr15159	transcription start site region 15159	1653 bp upstream
Tssr15160	transcription start site region 15160	1611 bp upstream
Tssr15161	transcription start site region 15161	358 bp upstream
Tssr15162	transcription start site region 15162	305 bp upstream
Tssr15163	transcription start site region 15163	271 bp upstream