rs52389568 SNP Detail

Summary

• ID
  rs52389568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16046197 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC AGCCTTTGCG AGCCCGGCCT
  R
  CCCGCCGCCC CTGCTGCCCC TGCCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148383582	ENSMUSSNP7223405	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52389568					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16046197 () rs orientation: forward

Symbol	Name	Function Class
Bbc3	BCL2 binding component 3	within coordinates
Cpgi18371	CpG island 18371	1277 bp distal
Cpgi18372	CpG island 18372	within coordinates
Cpgi18373	CpG island 18373	1275 bp proximal
Rr167075	regulatory region 167075	within coordinates
Tssr64600	transcription start site region 64600	1828 bp downstream
Tssr64601	transcription start site region 64601	1343 bp upstream
Tssr70733	transcription start site region 70733	937 bp upstream
Tssr70734	transcription start site region 70734	136 bp downstream
Tssr70735	transcription start site region 70735	175 bp downstream
Tssr70736	transcription start site region 70736	1697 bp downstream
Tssr70737	transcription start site region 70737	1762 bp downstream
Tssr70738	transcription start site region 70738	1781 bp downstream