rs52391145 SNP Detail

Summary

• ID
  rs52391145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:57764553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTATTCCA GAGAAGATGT
  TATTAGTCAG TTGGCCTTTA CCGTAACAAA TACCTGGGCC AACAGGTTAA CTCATCAGAT
  AAAGGTGCCT GCTGGCAAGC CTAAGGACCT AAGTTTGATT CCCAGAACCC ACACAATAGA
  AAGAGAGAAT AGACCCCAAG CAAGTGTCCT CTGGCCTCCA CATACAAGGT TACCGCCTGA
  Y
  ACACAAAATA AGTAAGGAAA TAAGTCATAA AAAACAAACA GCTGAGATAA TAAAGCGAAA
  AAGAAAAAAA GGGTTGGCTC AGTTTTAGAG ATGCTGGTCC ATGATCAGGC AGACCTGTTG
  CTTTAGGCTT CTAGTGGGGT ACCAGGTGAC AGTGTATCAG GGGCATGTGG GCAAAACCTC
  ATTACTGAGA AGCGAGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	WSB/EiJ
ss62408298	NES17242618	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	WSB/EiJ
rs52391145					SNP	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62408298	NES17242618	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:57764553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6542	CpG island 6542	1043 bp distal
Il17d	interleukin 17D	within coordinates
Rr404129	regulatory region 404129	1306 bp downstream
Tssr125871	transcription start site region 125871	1991 bp downstream
Tssr128966	transcription start site region 128966	1629 bp upstream
Tssr128967	transcription start site region 128967	1571 bp upstream
Tssr128968	transcription start site region 128968	1451 bp upstream