rs52391449 SNP Detail

Summary

• ID
  rs52391449
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118783969 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTG CGCGGGCACA CACACACAGA
  A
  AGCTCGCGGT GCAGGTTTGG GGGTG                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss145804452	ENSMUSSNP4286842	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs52391449					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118783969 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19631	CpG island 19631	within coordinates
Cpgi19632	CpG island 19632	534 bp proximal
Gm73654	predicted gene, 73654	166 bp upstream
Gpr139	G protein-coupled receptor 139	208 bp upstream
Rr381384	regulatory region 381384	350 bp upstream
Rr654600	regulatory region 654600	within coordinates
Rr654601	regulatory region 654601	177 bp proximal
Rr654602	regulatory region 654602	1584 bp proximal
Rr654603	regulatory region 654603	1821 bp proximal
Tssr74477	transcription start site region 74477	200 bp upstream
Tssr74478	transcription start site region 74478	174 bp upstream
Tssr74479	transcription start site region 74479	127 bp upstream