rs52391628 SNP Detail

Summary

• ID
  rs52391628
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124020313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACTCGAG GTCAACTTTA
  AGAAATTACT AACAATTCTT GCTAACATAC AAGAACGTGG ACTTGCAGGA TTTAGAGGCA
  CACCTAGCCT ATCATCATTT ATTTTTGTGC TTGAAACAAA CATAAAATCA TGAGCACTCT
  AGACTATTAG CCAAGACAAA CATATTTTGT CAATTATAAT GCCCTTTAAA AATTTAAAAC
  Y
  GTGTTTATTT TATGTTTTTC TTATGTGTTT TATGCTTGTA GTTTTTGCTG ATACACATTC
  TACACTGTTA TGTGATAACA TAAAGTATTT TCACAATGGT ACCTATAAAT AAGTGGCATG
  TTTAAGGTTT GAATTCAGTG GACATTTACA AAATATCATA AAATATAAAT ATATGAATTG
  ATTCCTTCAC TTAGATAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135782613	ENSMUSSNP1794926	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320926420	CHEV_3_123929582	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52391628					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124020313 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	464 bp distal