rs52391950 SNP Detail

Summary

• ID
  rs52391950
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51184324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCGA AGCGCGCAAC TCGCCCGCGC
  Y
  GACTCCCCAA CTTAGCCGCG GCTCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss640059161	FVB_NJ_3_51080825	EVA_MGPV3	EVA_MGPV3	f	SNP	T	C	C	C	C	C	T	T	T	C	C	C	C	T	T	T	C	T	T	C	C	C	T	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs52391950					SNP	T	C	C	C	C	C	T	T	T	C	C	C	C	T	T	T	C	T	T	C	C	C	T	C	C	C	C	T	C	C	C	T	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640059161	FVB_NJ_3_51080825	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51184324 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	within coordinates
Cpgi13132	CpG island 13132	within coordinates
Elf2	E74-like factor 2	within coordinates
Gm64767	predicted gene, 64767	292 bp downstream
Rr397655	regulatory region 397655	559 bp downstream
Rr576259	regulatory region 576259	629 bp distal
Rr576260	regulatory region 576260	within coordinates
Rr576261	regulatory region 576261	455 bp proximal
Rr576262	regulatory region 576262	566 bp proximal
Tssr29048	transcription start site region 29048	629 bp downstream
Tssr29049	transcription start site region 29049	40 bp downstream
Tssr33194	transcription start site region 33194	843 bp upstream
Tssr33195	transcription start site region 33195	374 bp downstream
Tssr33196	transcription start site region 33196	408 bp downstream
Tssr33197	transcription start site region 33197	567 bp downstream