rs52392005 SNP Detail

Summary

• ID
  rs52392005
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24567918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAC CAGCCAGACA CATAAAAATA
  A
  TAAAATAAAT ATTAAAATAG GATAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145351292	ENSMUSSNP6924511	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325330786	CHEV_17_24485889	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs52392005					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24567918 () rs orientation: forward

Symbol	Name	Function Class
Abca17	ATP-binding cassette, sub-family A member 17	within coordinates
Cpgi8716	CpG island 8716	1879 bp proximal
D17Jcs14	DNA segment, Chr 17, John C. Schimenti 14	9 bp distal
Rr523280	regulatory region 523280	1925 bp proximal