rs52393059 SNP Detail

Summary

• ID
  rs52393059
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:31242046 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAAAA TAAACATGTA ACTTTATCTT
  R
  TTTTTAAAAC TTAAAAAAAA ATTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147937351	ENSMUSSNP1224860	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss325134044	CHEV_16_31423314	CHEVERUD	SCREENING_POP	f	SNP		G	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs52393059					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:31242046 () rs orientation: forward

Symbol	Name	Function Class
Bdh1	3-hydroxybutyrate dehydrogenase, type 1	within coordinates
Rr514474	regulatory region 514474	938 bp distal
Rr514475	regulatory region 514475	828 bp distal
Rr514476	regulatory region 514476	1199 bp proximal
Tssr137893	transcription start site region 137893	950 bp downstream
Tssr137894	transcription start site region 137894	920 bp downstream
Tssr137895	transcription start site region 137895	881 bp downstream
Tssr140755	transcription start site region 140755	1850 bp upstream